WGS of endophytic bacteria from Pear tree - SRA

SRX18229326: WGS of endophytic bacteria from Pear tree
1 ILLUMINA (Illumina HiSeq 2500) run: 884,205 spots, 416.3M bases, 144.4Mb downloads

Design: Genomic DNA libraries were prepared using Nextera XT Library Prep Kit (Illumina, San Diego, USA) following the manufacturers protocol with the following modifications: two nanograms of DNA instead of one were used as input, and PCR elongation time was increased to 1 min from 30 seconds.

Submitted by: Centre of Biotechnology of Borj Cedria

Study: Whole genome sequencing of biocontrol bacteria

PRJNA761700 • SRP336173 • All experiments • All runs

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The goal of the project is to uncover genome sequences of bacteria that show biocontrol activity of plant pathogens. Bacteria were isolated from several plant species including Medicago truncatula, Solanum lycopersicum (tomato) and Solanum tuberosum (potato). Isolated bacteria fall into two different groups: Bacillus and Xanthomonas. We intend to do comparative genomics to find out differences and similarities in genomes of these bacteria.

Sample:

SAMN31677820 • SRS15725487 • All experiments • All runs

Organism: Bacillus sp. (in: Bacteria)

Library:

Name: Tg11

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 884,205 spots, 416.3M bases, 144.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR22252709	884,205	416.3M	144.4Mb	2022-11-10

ID:: 25212566

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